Mitochondrial DNA depletion analysis by pseudogene ratioing
- 30 January 2006
- journal article
- Published by Elsevier BV in Journal of Neuroscience Methods
- Vol. 150 (2), 265-271
- https://doi.org/10.1016/j.jneumeth.2005.06.023
Abstract
The mitochondrial DNA (mtDNA) depletion status of ρ 0 cell lines is typically assessed by hybridization or polymerase chain reaction (PCR) experiments, in which the failure to hybridize mtDNA or amplify mtDNA using mtDNA-directed primers suggests thorough mitochondrial genome removal. Here, we report the use of an mtDNA pseudogene ratioing technique for the additional confirmation of ρ 0 status. Total genomic DNA from a U251 human glioma cell line treated with ethidium bromide was amplified using primers designed to anneal either mtDNA or a previously described nuclear DNA-embedded mtDNA pseudogene (mtDNAψ). The resultant PCR product was used to generate plasmid clones. Sixty-two plasmid clones were genotyped, and all arose from mtDNAψ template. These data allowed us to determine with 95% confidence that the resultant mtDNA-depleted cell line contains less than one copy of mtDNA per 10 cells. Unlike previous hybridization or PCR-based analyses of mtDNA depletion, this mtDNAψ ratioing technique does not rely on interpretation of a negative result, and may prove useful as an adjunct for the determination of ρ 0 status or mtDNA copy number.Keywords
This publication has 12 references indexed in Scilit:
- Detection of mitochondrial DNA depletion in living human cells using PicoGreen stainingExperimental Cell Research, 2004
- A Novel Mitochondrial DNA-like Sequence in the Human Nuclear GenomeGenomics, 1999
- Evidence That Two Reports of mtDNA Cytochrome c Oxidase “Mutations” in Alzheimer's Disease Are Based on nDNA Pseudogenes of Recent Evolutionary OriginBiochemical and Biophysical Research Communications, 1998
- Apparent mtDNA heteroplasmy in Alzheimer’s disease patients and in normals due to PCR amplification of nucleus-embedded mtDNA pseudogenesProceedings of the National Academy of Sciences of the United States of America, 1997
- Cybrids in Alzheimer's disease: A cellular model of the disease?Neurology, 1997
- Creation and Characterization of Mitochondrial DNA‐Depleted Cell Lines with “Neuronal‐Like” PropertiesJournal of Neurochemistry, 1996
- Mitochondrial DNA: Molecular fossils in the nucleusCurrent Biology, 1996
- Introduction of disease-related mitochondrial DNA deletions into HeLa cells lacking mitochondrial DNA results in mitochondrial dysfunction.Proceedings of the National Academy of Sciences of the United States of America, 1991
- Human Cells Lacking mtDNA: Repopulation with Exogenous Mitochondria by ComplementationScience, 1989
- Sequence and organization of the human mitochondrial genomeNature, 1981