Within-host nucleotide diversity of virus populations: Insights from next-generation sequencing
- 4 December 2014
- journal article
- review article
- Published by Elsevier BV in Infection, Genetics and Evolution
- Vol. 30, 1-7
- https://doi.org/10.1016/j.meegid.2014.11.026
Abstract
No abstract availableKeywords
Funding Information
- United State National Institutes of Health (AI077376, AI096882)
- United States National Science Foundation Graduate Research Fellowship (DGE-0929297)
- University of South Carolina Presidential Fellowship
This publication has 43 references indexed in Scilit:
- Acute Phase CD8+ T Lymphocytes against Alternate Reading Frame Epitopes Select for Rapid Viral Escape during SIV InfectionPLOS ONE, 2013
- Analysis of Hepatitis C Virus Intrahost Diversity across the Coding Region by Ultradeep PyrosequencingJournal of Virology, 2012
- Transmission of Clonal Hepatitis C Virus Genomes Reveals the Dominant but Transitory Role of CD8+T Cells in Early Viral EvolutionJournal of Virology, 2011
- Beyond the Consensus: Dissecting Within-Host Viral Population Diversity of Foot-and-Mouth Disease Virus by Using Next-Generation Genome SequencingJournal of Virology, 2011
- PolyAna: analyzing synonymous and nonsynonymous polymorphic sitesConservation Genetics Resources, 2010
- Whole-Genome Characterization of Human and Simian Immunodeficiency Virus Intrahost Diversity by Ultradeep PyrosequencingJournal of Virology, 2010
- Hepatitis C Virus Transmission Bottlenecks Analyzed by Deep SequencingJournal of Virology, 2010
- Dynamics of haplotype frequency change in a CD8+TL epitope of simian immunodeficiency virusInfection, Genetics and Evolution, 2010
- Relaxation of purifying selection on live attenuated vaccine strains of the family ParamyxoviridaeVaccine, 2009
- Characterization of mutation spectra with ultra-deep pyrosequencing: Application to HIV-1 drug resistanceGenome Research, 2007