Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
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Open Access
- 1 January 2018
- journal article
- research article
- Published by Oxford University Press (OUP) in Virus Evolution
- Vol. 4 (1), vey016
- https://doi.org/10.1093/ve/vey016
Abstract
The Bayesian Evolutionary Analysis by Sampling Trees (BEAST) software package has become a primary tool for Bayesian phylogenetic and phylodynamic inference from genetic sequence data. BEAST unifies molecular phylogenetic reconstruction with complex discrete and continuous trait evolution, divergence-time dating, and coalescent demographic models in an efficient statistical inference engine using Markov chain Monte Carlo integration. A convenient, cross-platform, graphical user interface allows the flexible construction of complex evolutionary analyses.Keywords
Funding Information
- Wellcome Trust (206298/Z/17/Z)
- National Science Foundation (DMS 1264153)
- National Institutes of Health (R01 HG006139, R01 AI107034, U19 AI135995)
- Bijzonder Onderzoeksfonds (OT/14/115)
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