Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics
Open Access
- 19 February 2008
- journal article
- research article
- Published by Springer Science and Business Media LLC in BMC Bioinformatics
- Vol. 9 (1), 103
- https://doi.org/10.1186/1471-2105-9-103
Abstract
The availability of sequences from whole genomes to reconstruct the tree of life has the potential to enable the development of phylogenomic hypotheses in ways that have not been before possible. A significant bottleneck in the analysis of genomic-scale views of the tree of life is the time required for manual curation of genomic data into multi-gene phylogenetic matrices.Keywords
This publication has 12 references indexed in Scilit:
- How Many Genes Should a Systematist Sample? Conflicting Insights from a Phylogenomic Matrix Characterized by Replicated IncongruenceSystematic Biology, 2007
- ESTimating plant phylogeny: lessons from partitioningBMC Evolutionary Biology, 2006
- OrthologID: automation of genome-scale ortholog identification within a parsimony frameworkBioinformatics, 2006
- MUSCLE: multiple sequence alignment with high accuracy and high throughputNucleic Acids Research, 2004
- Genome-scale approaches to resolving incongruence in molecular phylogeniesNature, 2003
- The Parsimony Ratchet, a New Method for Rapid Parsimony AnalysisCladistics, 1999
- Corroboration among Data Sets in Simultaneous Analysis: Hidden Support for Phylogenetic Relationships among Higher Level Artiodactyl TaxaCladistics, 1999
- Stability of Cladistic Relationships between Cetacea and Higher-Level Artiodactyl TaxaSystematic Biology, 1999
- Constructing a Significance Test for IncongruenceSystematic Biology, 1995
- TESTING SIGNIFICANCE OF INCONGRUENCECladistics, 1994