ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons
- 1 January 2000
- journal article
- research article
- Published by Oxford University Press (OUP) in Nucleic Acids Research
- Vol. 28 (1), 267-269
- https://doi.org/10.1093/nar/28.1.267
Abstract
ProDom contains all protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases (http://www.toulouse. inra.fr/prodom.html), ProDom-CG results from a similar domain analysis as applied to completed genomes (http://www.toulouse.inra.fr/prodomCG.html). Recent improvements to the ProDom database and its server include: scaling up to include sequences from TrEMBL, addition of Pfam-A entries to the set of expert validated families, assignment of stable accession numbers, consistency indicators for domain families,domain arrangements of sub-families and links to Pfam-A.Keywords
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