Metagenomics and metatranscriptomics: Windows on CF-associated viral and microbial communities
Open Access
- 31 March 2013
- journal article
- Published by Elsevier BV in Journal of Cystic Fibrosis
- Vol. 12 (2), 154-164
- https://doi.org/10.1016/j.jcf.2012.07.009
Abstract
No abstract availableKeywords
Funding Information
- National Institute of Health and Cystic Foundation Research Inc. (1 R01 GM095384-01, CFRI #09-002)
This publication has 48 references indexed in Scilit:
- Decade-long bacterial community dynamics in cystic fibrosis airwaysProceedings of the National Academy of Sciences of the United States of America, 2012
- De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communitiesThe ISME Journal, 2011
- Quality control and preprocessing of metagenomic datasetsBioinformatics, 2011
- Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regionsNucleic Acids Research, 2010
- Validation of two ribosomal RNA removal methods for microbial metatranscriptomicsNature Methods, 2010
- Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the seaProceedings of the National Academy of Sciences of the United States of America, 2010
- Phylogenetic and metabolic diversity of bacteria associated with cystic fibrosisThe ISME Journal, 2010
- Molecular identification of bacteria in bronchoalveolar lavage fluid from children with cystic fibrosisProceedings of the National Academy of Sciences of the United States of America, 2007
- Gene expression profiling by massively parallel sequencingGenome Research, 2007
- SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARBNucleic Acids Research, 2007