Dalliance: interactive genome viewing on the web
Open Access
- 19 January 2011
- journal article
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 27 (6), 889-890
- https://doi.org/10.1093/bioinformatics/btr020
Abstract
Summary: Dalliance is a new genome viewer which offers a high level of interactivity while running within a web browser. All data is fetched using the established distributed annotation system (DAS) protocol, making it easy to customize the browser and add extra data. Availability and Implementation: Dalliance runs entirely within your web browser, and relies on existing DAS server infrastructure. Browsers for several mammalian genomes are available at http://www.biodalliance.org/, and the use of DAS means you can add your own data to these browsers. In addition, the source code (Javascript) is available under the BSD license, and is straightforward to install on your own web server and embed within other documents. Contact: thomas@biodalliance.orgKeywords
This publication has 11 references indexed in Scilit:
- Integrative genomics viewerNature Biotechnology, 2011
- BigWig and BigBed: enabling browsing of large distributed datasetsBioinformatics, 2010
- The UCSC Genome Browser database: update 2010Nucleic Acids Research, 2009
- JBrowse: A next-generation genome browserGenome Research, 2009
- The Sequence Alignment/Map format and SAMtoolsBioinformatics, 2009
- Ensembl 2009Nucleic Acids Research, 2008
- Integrating biological data – the Distributed Annotation SystemBMC Bioinformatics, 2008
- X:Map: annotation and visualization of genome structure for Affymetrix exon array analysisNucleic Acids Research, 2007
- Apollo: a sequence annotation editorGenome Biology, 2002
- The Generic Genome Browser: A Building Block for a Model Organism System DatabaseGenome Research, 2002