Whole genome amplification using a degenerate oligonucleotide primer allows hundreds of genotypes to be performed on less than one nanogram of genomic DNA
- 10 December 1996
- journal article
- Published by Proceedings of the National Academy of Sciences in Proceedings of the National Academy of Sciences of the United States of America
- Vol. 93 (25), 14676-14679
- https://doi.org/10.1073/pnas.93.25.14676
Abstract
Genetic analysis of limiting quantities of genomic DNA play an important role in DNA forensics, paleoarcheology, genetic disease diagnosis, genetic linkage analysis, and genetic diversity studies. We have tested the ability of degenerate oligonucleotide primed polymerase chain reaction (DOP-PCR) to amplify picogram quantities of human genomic DNA for the purpose of increasing the amount of template for genotyping with microsatellite repeat markers. DNA was uniformly amplified at a large number of typable loci throughout the human genome with starting template DNAs from as little as 15 pg to as much as 400 ng. A much greater-fold enrichment was seen for the smaller genomic DOP-PCRs. All markers tested were amplified from starting genomic DNAs in the range of 0.6-40 ng with amplifications of 200- to 600-fold. The DOP-PCR-amplified genomic DNA was an excellent and reliable template for genotyping with microsatellites, which give distinct bands with no increase in stutter artifact on di-, tri-, and tetranucleotide repeats. There appears to be equal amplification of genomic DNA from 55 of 55 tested discrete microsatellites implying near complete coverage of the human genome. Thus, DOP-PCR appears to allow unbiased, hundreds-fold whole genome amplification of human genomic DNA for genotypic analysis.Keywords
This publication has 19 references indexed in Scilit:
- Utility of a “Swish and Spit” Technique for the Collection of Buccal Cells for TAP Haplotype DeterminationMayo Clinic Proceedings, 1995
- Molecular Pathology, Informed Consent, and the Paraffin BlockDiagnostic Molecular Pathology, 1995
- Preimplantation single-cell analysis of multiple genetic loci by whole-genome amplification.Proceedings of the National Academy of Sciences of the United States of America, 1994
- PCR amplification of megabase DNA with tagged random primers (T-PCR)Nucleic Acids Research, 1993
- Competitive PCRNature, 1992
- Degenerate oligonucleotide-primed PCR: General amplification of target DNA by a single degenerate primerGenomics, 1992
- Whole genome amplification from a single cell: implications for genetic analysis.Proceedings of the National Academy of Sciences of the United States of America, 1992
- Genotypic Confirmation from the Original Dried Blood Specimens in a Neonatal Hemoglobinopathy Screening ProgramPediatric Research, 1992
- Cloning defined regions of the human genome by microdissection of banded chromosomes and enzymatic amplificationNature, 1989
- SIMPLE NON-INVASIVE METHOD TO OBTAIN DNA FOR GENE ANALYSISThe Lancet, 1988