Searching NCBI's dbSNP Database
Open Access
- 1 December 2010
- journal article
- unit
- Published by Wiley in Current Protocols in Bioinformatics
- Vol. 32 (1), 1.19.1-1.19.18
- https://doi.org/10.1002/0471250953.bi0119s32
Abstract
The Single‐Nucleotide Polymorphism database (dbSNP) is a variation database at the National Center for Biotechnology Information (NCBI). It is a public repository of submitted nucleotide variations and is part of NCBI's search and retrieval system Entrez. This unit describes two basic protocols to search dbSNP effectively, one to perform a text‐based search and another to perform a sequence‐based search. The unit also describes one of the result display formats called GeneView to obtain information about all submitted SNPs in a particular gene. Curr. Protoc. Bioinform. 32:1.19.1‐1.19.18. © 2010 by John Wiley & Sons, Inc.Keywords
This publication has 13 references indexed in Scilit:
- Genomic Medicine — An Updated PrimerThe New England Journal of Medicine, 2010
- Database resources of the National Center for Biotechnology InformationNucleic Acids Research, 2009
- Using NCBI BLASTCurrent Protocols Essential Laboratory Techniques, 2009
- Database indexing for production MegaBLAST searchesBioinformatics, 2008
- The Diploid Genome Sequence of an Individual HumanPLoS Biology, 2007
- A database of locus-specific databasesNature Genetics, 2007
- NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteinsNucleic Acids Research, 2007
- Genomic Medicine — A PrimerThe New England Journal of Medicine, 2002
- The Sequence of the Human GenomeScience, 2001
- Basic local alignment search toolJournal of Molecular Biology, 1990