Algorithms for canonical molecular dynamics simulations
- 1 January 1991
- journal article
- research article
- Published by Informa UK Limited in Molecular Physics
- Vol. 72 (1), 159-168
- https://doi.org/10.1080/00268979100100101
Abstract
Finite-difference algorithms for Nosé-Hoover canonical molecular dynamics (NH-MD) are investigated. In general, NH-MD functions excellently, but it is demonstrated that time symmetry is broken in NH-MD algorithms and that this results in irreversible thermostatting, which can destroy the canonical sampling. However, the traditional ‘leapfrog’ algorithm, extended to NH-MD, works almost perfectly and equilibrates correctly, even for a system of a single butane chain, which is found to be very sensitive to numerical approximations. The MD conserves the total momentum—and for a single molecule also the angular momentum. NH-MD can run with or without these conservation constraints, and it is stable with respect to round-off errors, at least for the first 109 time steps for the present system.Keywords
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