Molecular docking and structural analysis of cofactor-protein interaction between NAD+ and 11β-hydroxysteroid dehydrogenase type 2
- 11 June 2011
- journal article
- Published by Springer Science and Business Media LLC in Journal of Molecular Modeling
- Vol. 18 (3), 1037-1048
- https://doi.org/10.1007/s00894-011-1140-2
Abstract
Molecular docking and structural analysis of the cofactor-protein interaction between NAD+ and human (h) or mouse (m) 11β-hydroxysteroid dehydrogenase type 2 (11βHSD2) were performed with the molecular operating environment (MOE). 11βHSD1 (PDB code: 3HFG) was selected as a template for the 3D structure modeling of 11βHSD2. The MOE docking (MOE-dock) and the alpha sphere and excluded volume-based ligand-protein docking (ASE-dock) showed that both NAD+-h11βHSD2 and NAD+-m11βHSD2 models have a similar binding orientation to the template cofactor-protein model. Our present study also revealed that Asp91, Phe94, Tyr232 and Thr267 could be of importance in the interaction between NAD+ and 11βHSD2. NADP+ was incapable of entering into the cofactor-binding site of the 11βHSD2 models. The present study proposes the latest models for 11βHSD2 and its cofactor NAD+, and to the best of our knowledge, this is the first report of a m11βHSD2 model with NAD+.Keywords
This publication has 49 references indexed in Scilit:
- Regulation of 11β-hydroxysteroid dehydrogenase 1 and 2 by IGF-1 in miceBiochemical and Biophysical Research Communications, 2010
- Rapid mechanisms of glucocorticoid signaling in the Leydig cellSteroids, 2008
- Ph4Dock: Pharmacophore-Based Protein−Ligand DockingJournal of Medicinal Chemistry, 2004
- The Many Roles of Computation in Drug DiscoveryScience, 2004
- Predicting undesirable drug interactions with promiscuous proteins in silicoDrug Discovery Today, 2004
- Inhibition of 11β-hydroxysteroid dehydrogenase type 2 by dithiocarbamatesBiochemical and Biophysical Research Communications, 2003
- Merck molecular force field. I. Basis, form, scope, parameterization, and performance of MMFF94Journal of Computational Chemistry, 1996
- Prediction of Protein Three-dimensional Structures in Insertion and Deletion Regions: A Procedure for Searching Data Bases of Representative Protein Fragments Using Geometric Scoring CriteriaJournal of Molecular Biology, 1995
- Accurate modeling of protein conformation by automatic segment matchingJournal of Molecular Biology, 1992
- The Monte Carlo MethodJournal of the American Statistical Association, 1949