Detecting and Estimating Contamination of Human DNA Samples in Sequencing and Array-Based Genotype Data
- 2 November 2012
- journal article
- Published by Elsevier BV in American Journal of Human Genetics
- Vol. 91 (5), 839-848
- https://doi.org/10.1016/j.ajhg.2012.09.004
Abstract
No abstract availableKeywords
This publication has 11 references indexed in Scilit:
- The Metabochip, a Custom Genotyping Array for Genetic Studies of Metabolic, Cardiovascular, and Anthropometric TraitsPLoS Genetics, 2012
- ContEst: estimating cross-contamination of human samples in next-generation sequencing dataBioinformatics, 2011
- Low-coverage sequencing: Implications for design of complex trait association studiesGenome Research, 2011
- Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic DatasetsPLOS ONE, 2011
- A map of human genome variation from population-scale sequencingNature, 2010
- Simultaneous Genotype Calling and Haplotype Phasing Improves Genotype Accuracy and Reduces False-Positive Associations for Genome-wide Association StudiesAmerican Journal of Human Genetics, 2009
- Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVsNature Genetics, 2008
- PennCNV: An integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping dataGenome Research, 2007
- Increasing Power for Tests of Genetic Association in the Presence of Phenotype and/or Genotype Error by Use of Double-SamplingStatistical Applications in Genetics and Molecular Biology, 2004
- Asymptotic Properties of Maximum Likelihood Estimators and Likelihood Ratio Tests under Nonstandard ConditionsJournal of the American Statistical Association, 1987