Duplex Real-Time SYBR Green PCR Assays for Detection of 17 Species of Food- or Waterborne Pathogens in Stools
Open Access
- 1 November 2003
- journal article
- Published by American Society for Microbiology in Journal of Clinical Microbiology
- Vol. 41 (11), 5134-5146
- https://doi.org/10.1128/jcm.41.11.5134-5146.2003
Abstract
A duplex real-time SYBR Green LightCycler PCR (LC-PCR) assay with DNA extraction using the QIAamp DNA Stool Mini kit was evaluated with regard to detection of 8 of 17 species of food- or waterborne pathogens in five stool specimens in 2 h or less. The protocol used the same LC-PCR with 20 pairs of specific primers. The products formed were identified based on a melting point temperature (Tm) curve analysis. The 17 species of food- or waterborne pathogens examined were enteroinvasive Escherichia coli, enteropathogenic E. coli, enterohemorrhagic E. coli, enterotoxigenic E. coli, enteroaggregative E. coli, Salmonella spp., Shigella spp., Yersinia enterocolitica, Yersinia pseudotuberculosis, Campylobacter jejuni, Vibrio cholerae, Vibrio parahaemolyticus, Vibrio vulnificus, Aeromonas spp., Staphylococcus aureus, Clostridium perfringens, and Bacillus cereus. No interference with the LC-PCR assay was observed when stool specimens were artificially inoculated with each bacterial species. The detection levels were approximately 105 food- or waterborne pathogenic bacteria per g of stool. The protocol for processing stool specimens for less than 104 food- or waterborne pathogenic bacteria per g of stool requires an overnight enrichment step to achieve adequate sensitivity. However, the rapid amplification and reliable detection of specific genes of greater than 105 food- or waterborne pathogenic bacteria per g in samples should facilitate the diagnosis and management of food- or waterborne outbreaks.Keywords
This publication has 48 references indexed in Scilit:
- Detection in Escherichia coli of the Genes Encoding the Major Virulence Factors, the Genes Defining the O157:H7 Serotype, and Components of the Type 2 Shiga Toxin Family by Multiplex PCRJournal of Clinical Microbiology, 2002
- Rapid Identification of Staphylococcus aureus and the mecA Gene from BacT/ALERT Blood Culture Bottles by Using the LightCycler SystemJournal of Clinical Microbiology, 2002
- Rapid Detection of Escherichia coli O157:H7 with Multiplex Real-Time PCR AssaysApplied and Environmental Microbiology, 2002
- Characterization of Enteropathogenic and Enteroaggregative Escherichia coli Isolated from Diarrheal OutbreaksJournal of Clinical Microbiology, 2002
- Modeling of 5′ Nuclease Real-Time Responses for Optimization of a High-Throughput Enrichment PCR Procedure for Salmonella entericaJournal of Clinical Microbiology, 2002
- Evaluation of a PCR/DNA Probe Colorimetric Membrane Assay for Identification of Campylobacter spp. in Human Stool SpecimensJournal of Clinical Microbiology, 2001
- TaqMan PCR for Detection of Vibrio cholerae O1, O139, Non-O1, and Non-O139 in Pure Cultures, Raw Oysters, and Synthetic SeawaterApplied and Environmental Microbiology, 2001
- Rapid Identification of Campylobacter spp. by Melting Peak Analysis of Biprobes in Real-Time PCRJournal of Clinical Microbiology, 2001
- An Effective, Rapid and Simple Method for Isolation of Shiga Toxin-Producing Escherichia coli 026, 0111 and 0157 from Faeces and Food SamplesZentralblatt für Bakteriologie, 1999
- Food Poisoning Due to Clostridium perfringens in the United StatesThe Journal of Infectious Diseases, 1983