Fluorescence-monitored Conformational Change on the 3′-end of tRNA Upon Aminoacylation

Abstract

Fluorescent tRNAs species with formycine in the 3′-terminal position (tRNA-CCF) were derived from Escherichia coli tRNA^Val, Thermus thermophilus tRNA^Asp and Thermus thermophilus tRNA^Phe. The fluorescence of formycine was used to monitor the conformational changes at the 3′-terminus of tRNA caused by aminoacylation and hydrolysis of aminoacyl residue from aminoacyl-tRNAs. An increase of about 15% in the fluorescence intensity was observed after aminoacylation of the three tRNA-CCF. This change in fluorescence amplitude that is reversed by hydrolysis of the aminoacyl residue, does not depend on the structure of the amino acid or tRNA sequence. A local conformational change at the 3′-terminal formycine probably involving a partial destacking of the base moiety in the ACCF end takes place as a consequence of aminoacylation. A structural change at the 3′-terminus of tRNA induced by attachment and detachment of the acyl residue may be important in controlling the substrate/product relationship in reactions in which tRNA participates during protein biosynthesis.