Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Top Cited Papers
- 1 March 2012
- journal article
- research article
- Published by Springer Science and Business Media LLC in Nature Protocols
- Vol. 7 (3), 562-578
- https://doi.org/10.1038/nprot.2012.016
Abstract
No abstract availableKeywords
This publication has 44 references indexed in Scilit:
- Sequencing technology does not eliminate biological variabilityNature Biotechnology, 2011
- Full-length transcriptome assembly from RNA-Seq data without a reference genomeNature Biotechnology, 2011
- Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cellsNature, 2011
- Integrative genomics viewerNature Biotechnology, 2011
- The developmental transcriptome of Drosophila melanogasterNature, 2010
- Comprehensive comparative analysis of strand-specific RNA sequencing methodsNature Methods, 2010
- Cloud computing and the DNA data raceNature Biotechnology, 2010
- Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAsNature Biotechnology, 2010
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiationNature Biotechnology, 2010
- Mapping and quantifying mammalian transcriptomes by RNA-SeqNature Methods, 2008