BioJava: an open-source framework for bioinformatics
Open Access
- 8 August 2008
- journal article
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 24 (18), 2096-2097
- https://doi.org/10.1093/bioinformatics/btn397
Abstract
BioJava is a mature open-source project that provides a framework for processing of biological data. BioJava contains powerful analysis and statistical routines, tools for parsing common file formats and packages for manipulating sequences and 3D structures. It enables rapid bioinformatics application development in the Java programming language. BioJava is an open-source project distributed under the Lesser GPL (LGPL). BioJava can be downloaded from the BioJava website (http://www.biojava.org). BioJava requires Java 1.5 or higher. All queries should be directed to the BioJava mailing lists. Details are available at http://biojava.org/wiki/BioJava:MailingLists.Keywords
This publication has 8 references indexed in Scilit:
- The Bioperl Toolkit: Perl Modules for the Life SciencesGenome Research, 2002
- The Bio* toolkits -- a brief overviewBriefings in Bioinformatics, 2002
- BioJavaACM SIGBIO Newsletter, 2000
- The Protein Data BankNucleic Acids Research, 2000
- Base-Calling of Automated Sequencer Traces UsingPhred. I. Accuracy AssessmentGenome Research, 1998
- Nexus: An Extensible File Format for Systematic InformationSystematic Biology, 1997
- NEXUS: An Extensible File Format for Systematic InformationSystematic Biology, 1997
- Gapped BLAST and PSI-BLAST: a new generation of protein database search programsNucleic Acids Research, 1997