Prediction of RNA secondary structure by free energy minimization
- 30 June 2006
- journal article
- review article
- Published by Elsevier BV in Current Opinion in Structural Biology
- Vol. 16 (3), 270-278
- https://doi.org/10.1016/j.sbi.2006.05.010
Abstract
No abstract availableKeywords
This publication has 53 references indexed in Scilit:
- Riboswitches as versatile gene control elementsCurrent Opinion in Structural Biology, 2005
- Accelerated probabilistic inference of RNA structure evolutionBMC Bioinformatics, 2005
- Factors Affecting Thermodynamic Stabilities of RNA 3 × 3 Internal LoopsBiochemistry, 2004
- Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure predictionBMC Bioinformatics, 2004
- Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure predictionBMC Bioinformatics, 2004
- Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structureProceedings of the National Academy of Sciences of the United States of America, 2004
- Experimentally Derived Nearest-Neighbor Parameters for the Stability of RNA Three- and Four-Way Multibranch LoopsBiochemistry, 2001
- One Sequence, Two Ribozymes: Implications for the Emergence of New Ribozyme FoldsScience, 2000
- Modeling RNA folding paths with pseudoknots: Application to hepatitis delta virus ribozymeProceedings of the National Academy of Sciences of the United States of America, 2000
- RNA secondary structure prediction using stochastic context-free grammars and evolutionary history.Bioinformatics, 1999