Assessing computational tools for the discovery of transcription factor binding sites
Top Cited Papers
- 1 January 2005
- journal article
- research article
- Published by Springer Science and Business Media LLC in Nature Biotechnology
- Vol. 23 (1), 137-144
- https://doi.org/10.1038/nbt1053
Abstract
No abstract availableKeywords
This publication has 19 references indexed in Scilit:
- Environmentally Induced Foregut Remodeling by PHA-4/FoxA and DAF-12/NHRScience, 2004
- Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genesNucleic Acids Research, 2004
- Finding functional sequence elements by multiple local alignmentNucleic Acids Research, 2004
- Critical assessment of methods of protein structure prediction (CASP)-round VProteins, 2003
- YMF: a program for discovery of novel transcription factor binding sites by statistical overrepresentationNucleic Acids Research, 2003
- Computational identification of Cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiaeJournal of Molecular Biology, 2000
- Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequenciesJournal of Molecular Biology, 1998
- Prediction of complete gene structures in human genomic DNAJournal of Molecular Biology, 1997
- Evaluation of Gene Structure Prediction ProgramsGenomics, 1996
- TRANSFAC: a database on transcription factors and their DNA binding sitesNucleic Acids Research, 1996