ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data
Open Access
- 1 January 2005
- journal article
- research article
- Published by Springer Science and Business Media LLC in Genome Biology
- Vol. 6 (11), R97
- https://doi.org/10.1186/gb-2005-6-11-r97
Abstract
ChIPOTle is a new software tool designed specifically for the analysis of ChIP-chip data.Keywords
This publication has 13 references indexed in Scilit:
- Progress and challenges in profiling the dynamics of chromatin and transcription factor binding with DNA microarraysCurrent Opinion in Genetics & Development, 2004
- Genome-Wide Mapping of the Cohesin Complex in the Yeast Saccharomyces cerevisiaePLoS Biology, 2004
- ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experimentsGenomics, 2004
- In vivo protein–protein and protein–DNA crosslinking for genomewide binding microarrayMethods, 2003
- A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cellsProceedings of the National Academy of Sciences of the United States of America, 2003
- Genome-wide Mapping of Protein-DNA Interactions by Chromatin Immunoprecipitation and DNA Microarray HybridizationMethods in molecular biology (Clifton, N.J.), 2002
- Transcriptional Regulatory Networks in Saccharomyces cerevisiaeScience, 2002
- Large-Scale Transcriptional Activity in Chromosomes 21 and 22Science, 2002
- GATA-1 binding sites mapped in the β-globin locus by using mammalian chIp-chip analysisProceedings of the National Academy of Sciences of the United States of America, 2002
- Characterizing transcription factor binding sites using formaldehyde crosslinking and immunoprecipitationMethods, 2002