Complete mitochondrial genome of Coenomyia ferruginea (Scopoli). (Diptera, Coenomyiidae)
Open Access
- 2 July 2020
- journal article
- research article
- Published by Taylor & Francis Ltd in Mitochondrial DNA Part B
- Vol. 5 (3), 2711-2712
- https://doi.org/10.1080/23802359.2020.1787889
Abstract
The dipteran family Coenomyiidae was firstly separated from the Xylophagidae by Akrira Nagatomi in 1975. We sequenced and annotated the mitochondrial genome of Coenomyia ferruginea, the first representative of genera Coenomyia with complete mitochondrial data. This mitogenome is 17,283 bp totally, which consists of 22 transfer RNAs, 13 protein-coding genes, 2 ribosomal RNAs, and 1 non-coding control region. All genes have the conservational arrangement like other published species of brachyceran flies. The nucleotide composition biases toward A and T, the overall A + T% was up to 75.4% of the entire mitogenome. Both Bayesian inference and ML analysis strongly supported the sister relationship between Coenomyiidae and Xylophagidae. Our results also suggested that Xylophagomorpha is the sister group to Stratiomyomorpha.Keywords
Funding Information
- National Natural Science Foundation of China (31772497, 31970444)
This publication has 12 references indexed in Scilit:
- Taxon sampling to address an ancient rapid radiation: a supermatrix phylogeny of early brachyceran flies (Diptera)Systematic Entomology, 2017
- The complete mitochondrial genome of the Atylotus miser (Diptera: Tabanomorpha: Tabanidae), with mitochondrial genome phylogeny of lower Brachycera (Orthorrhapha)Gene, 2016
- Bulk De Novo Mitogenome Assembly from Pooled Total DNA Elucidates the Phylogeny of Weevils (Coleoptera: Curculionoidea)Molecular Biology and Evolution, 2014
- The phylogenetic relationships among infraorders and superfamilies of Diptera based on morphological evidenceSystematic Entomology, 2012
- IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depthBioinformatics, 2012
- MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model SpaceSystematic Biology, 2012
- RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed modelsBioinformatics, 2006
- Definition of Coenomyitidae (Diptera). IProceedings of the Japan Academy, 1975
- Definition of Coenomyiidae (Diptera). IIIProceedings of the Japan Academy, 1975
- Definition of Coenomyiidae (Diptera). IIProceedings of the Japan Academy, 1975