Aligning Short Sequencing Reads with Bowtie
Top Cited Papers
Open Access
- 1 December 2010
- journal article
- unit
- Published by Wiley in Current Protocols in Bioinformatics
- Vol. 32 (1), 11.7.1-11.7.14
- https://doi.org/10.1002/0471250953.bi1107s32
Abstract
This unit shows how to use the Bowtie package to align short sequencing reads, such as those output by second‐generation sequencing instruments. It also includes protocols for building a genome index and calling consensus sequences from Bowtie alignments using SAMtools. Curr. Protoc. Bioinform. 32:11.7.1‐11.7.14. © 2010 by John Wiley & Sons, Inc.Keywords
This publication has 3 references indexed in Scilit:
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- The Sequence Alignment/Map format and SAMtoolsBioinformatics, 2009
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genomeGenome Biology, 2009