BISEN: Biochemical Simulation Environment
Open Access
- 25 February 2009
- journal article
- research article
- Published by Oxford University Press (OUP) in Bioinformatics
- Vol. 25 (6), 836-837
- https://doi.org/10.1093/bioinformatics/btp069
Abstract
Summary: The Biochemical Simulation Environment (BISEN) is a suite of tools for generating equations and associated computer programs for simulating biochemical systems in the MATLAB® computing environment. This is the first package that can generate appropriate systems of differential equations for user-specified multi-compartment systems of enzymes and transporters accounting for detailed biochemical thermodynamics, rapid equilibria of multiple biochemical species and dynamic proton and metal ion buffering. Availability: The software and a user manual (including several tutorial examples) are available at bbc.mcw.edu/BISEN. Contact:dbeard@mcw.eduKeywords
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