Accurate identification of single-nucleotide variants in whole-genome-amplified single cells
Open Access
- 20 March 2017
- journal article
- research article
- Published by Springer Science and Business Media LLC in Nature Methods
- Vol. 14 (5), 491-493
- https://doi.org/10.1038/nmeth.4227
Abstract
Single-cell multiple displacement amplification (SCMDA) and a tool for single-nucleotide-variant calling (SCcaller) dramatically decrease artifacts in genome-wide variant calling from single cells. Mutation analysis in single-cell genomes is prone to artifacts associated with cell lysis and whole-genome amplification. Here we addressed these issues by developing single-cell multiple displacement amplification (SCMDA) and a general-purpose single-cell-variant caller, SCcaller ( https://github.com/biosinodx/SCcaller/ ). By comparing SCMDA-amplified single cells with unamplified clones from the same population, we validated the procedure as a firm foundation for standardized somatic-mutation analysis in single-cell genomics.This publication has 19 references indexed in Scilit:
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