The complete genome sequence of Escherichia phage SRT7, a novel T7-like phage
- 14 February 2019
- journal article
- research article
- Published by Springer Science and Business Media LLC in Archiv für die gesamte Virusforschung
- Vol. 164 (4), 1217-1219
- https://doi.org/10.1007/s00705-019-04182-4
Abstract
In this study, we isolated a novel virulent Escherichia phage, SRT7. Its genome is a double-stranded linear DNA molecule containing 39,883 bp. Direct terminal repeats with a length of 175 bp, are present at both ends of the genome. The G+C content is 50.54%. Forty-seven putative protein coding genes were identified. No tRNA or rRNA genes were identified. Comparative genomic analysis revealed that phage SRT7 is a novel member of the T7-like phage cluster, but it forms a singleton subcluster.Keywords
Funding Information
- National Natural Science Foundation of China (31600148)
This publication has 16 references indexed in Scilit:
- Easyfig: a genome comparison visualizerBioinformatics, 2011
- Molecular mechanisms of Escherichia coli pathogenicityNature Reviews Microbiology, 2009
- NCBI BLAST: a better web interfaceNucleic Acids Research, 2008
- RNAmmer: consistent and rapid annotation of ribosomal RNA genesNucleic Acids Research, 2007
- Identifying bacterial genes and endosymbiont DNA with GlimmerBioinformatics, 2007
- NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteinsNucleic Acids Research, 2007
- Localization of theEscherichia coliRNA Polymerase β′ Subunit Residue Phosphorylated by Bacteriophage T7 Kinase Gp0.7Journal of Bacteriology, 2006
- The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAsNucleic Acids Research, 2005
- Evolutionary relationships among diverse bacteriophages and prophages: All the world’s a phageProceedings of the National Academy of Sciences of the United States of America, 1999
- Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elementsJournal of Molecular Biology, 1983