An ontology of fungal subcellular traits
- 1 September 2011
- journal article
- Published by Wiley in American Journal of Botany
- Vol. 98 (9), 1504-1510
- https://doi.org/10.3732/ajb.1100047
Abstract
•Premise of the study: The Fungal Subcellular Ontology used in the Assembling the Fungal Tree of Life project is a taxon-wide ontology (controlled vocabulary for attributes) designed to clarify and integrate the broad range of subcellular characters and character states used in higher-level fungal systematics. As in the algae, cellular characters are important phylogenetic markers in kingdom Fungi. The Fungal Subcellular Ontology has been developed primarily to help researchers, especially systematists, in their search for information on subcellular characters across the Fungi, and it complements existing biological ontologies, including the Gene Ontology.Keywords
Funding Information
- National Science Foundation (DEB‐0732550, DEB‐0732599, DEB‐0732671, DEB‐0732503)
This publication has 36 references indexed in Scilit:
- The FungiCurrent Biology, 2009
- The GOA database in 2009--an integrated Gene Ontology Annotation resourceNucleic Acids Research, 2009
- An anatomy ontology to represent biological knowledge in Dictyostelium discoideumBMC Genomics, 2008
- The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotationsNucleic Acids Research, 2008
- The OBO Foundry: coordinated evolution of ontologies to support biomedical data integrationNature Biotechnology, 2007
- The Gene Ontology project in 2008Nucleic Acids Research, 2007
- Gene Ontology annotations at SGD: new data sources and annotation methodsNucleic Acids Research, 2007
- The Plant Structure Ontology, a Unified Vocabulary of Anatomy and Morphology of a Flowering PlantPlant Physiology, 2006
- FlyBase: genomes by the dozenNucleic Acids Research, 2006
- Bio-ontologies: current trends and future directionsBriefings in Bioinformatics, 2006