SARS-CoV-2 infection and viral load are associated with the upper respiratory tract microbiome
- 9 February 2021
- journal article
- research article
- Published by Elsevier BV in Journal of Allergy and Clinical Immunology
- Vol. 147 (4), 1226-1233.e2
- https://doi.org/10.1016/j.jaci.2021.02.001
Abstract
No abstract availableFunding Information
- CDC
- NIAID DMID
- NHLBI
This publication has 26 references indexed in Scilit:
- Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responsesMicrobiome, 2018
- Nasopharyngeal Lactobacillus is associated with a reduced risk of childhood wheezing illnesses following acute respiratory syncytial virus infection in infancyJournal of Allergy and Clinical Immunology, 2018
- The microbiota of the respiratory tract: gatekeeper to respiratory healthNature Reviews Microbiology, 2017
- Differences in the Nasopharyngeal Microbiome During Acute Respiratory Tract Infection With Human Rhinovirus and Respiratory Syncytial Virus in InfancyThe Journal of Infectious Diseases, 2016
- Nasopharyngeal Microbiota, Host Transcriptome, and Disease Severity in Children with Respiratory Syncytial Virus InfectionAmerican Journal of Respiratory and Critical Care Medicine, 2016
- DADA2: High-resolution sample inference from Illumina amplicon dataNature Methods, 2016
- Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2Genome Biology, 2014
- Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing PlatformApplied and Environmental Microbiology, 2013
- phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census DataPLOS ONE, 2013
- SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARBNucleic Acids Research, 2007