Unraveling the hurdles of a large COVID-19 epidemiological investigation by viral genomics
- 21 May 2022
- journal article
- research article
- Published by Elsevier BV in Journal of Infection
- Vol. 85 (1), 64-74
- https://doi.org/10.1016/j.jinf.2022.05.013
Abstract
No abstract availableThis publication has 55 references indexed in Scilit:
- Phylogenetic network analysis of SARS-CoV-2 genomesProceedings of the National Academy of Sciences of the United States of America, 2020
- Whole genome and phylogenetic analysis of two SARS-CoV-2 strains isolated in Italy in January and February 2020: additional clues on multiple introductions and further circulation in EuropeEurosurveillance, 2020
- A Novel Coronavirus from Patients with Pneumonia in China, 2019The New England Journal of Medicine, 2020
- A pneumonia outbreak associated with a new coronavirus of probable bat originNature, 2020
- nCoV-2019 sequencing protocol v1Published by ZappyLab, Inc. ,2020
- INSaFLU: an automated open web-based bioinformatics suite “from-reads” for influenza whole-genome-sequencing-based surveillanceGenome Medicine, 2018
- Nextstrain: real-time tracking of pathogen evolutionBioinformatics, 2018
- TreeTime: Maximum-likelihood phylodynamic analysisVirus Evolution, 2018
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood PhylogeniesMolecular Biology and Evolution, 2014
- MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transformNucleic Acids Research, 2002