A hybrid DNA sequencing approach is needed to properly link genotype to phenotype in multi-drug resistant bacteria
- 26 July 2021
- journal article
- research article
- Published by Elsevier BV in Environmental Pollution
- Vol. 289, 117856
- https://doi.org/10.1016/j.envpol.2021.117856
Abstract
No abstract availableKeywords
Funding Information
- Jeju National University
- Korea Institute of Marine Science and Technology promotion
- Ministry of Education (2019R1A6A1A10072987)
- Korea Disease Control and Prevention Agency
- Ministry of Oceans and Fisheries (20180430)
- Korea Disease Control and Prevention Agency (2020-ER5408-00)
- Korea Institute of Science and Technology
- Minnesota Agricultural Experiment Station
- National Research Foundation of Korea
This publication has 48 references indexed in Scilit:
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly ImprovementPLOS ONE, 2014
- Broad host range plasmids can invade an unexpectedly diverse fraction of a soil bacterial communityThe ISME Journal, 2014
- Genomic Analysis Reveals Distinct Concentration-Dependent Evolutionary Trajectories for Antibiotic Resistance in Escherichia coliDNA Research, 2014
- In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence TypingAntimicrobial Agents and Chemotherapy, 2014
- PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategiesNucleic Acids Research, 2012
- Using the RDP Classifier to Predict Taxonomic Novelty and Reduce the Search Space for Finding Novel OrganismsPLOS ONE, 2012
- BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisonsBMC Genomics, 2011
- Increased Transfer of a Multidrug Resistance Plasmid in Escherichia coli Biofilms at the Air-Liquid InterfaceApplied and Environmental Microbiology, 2011
- Easyfig: a genome comparison visualizerBioinformatics, 2011
- A global view of antibiotic resistanceFEMS Microbiology Reviews, 2009